发表学术论文100余篇，其中SSCI、SCI、EI、CSSCI论文60余篇，ESI高被引论文2篇。近年部分代表性论文：
[1] Tonghui Ding, Junfei Chen, Liping Fang, Juan Jia. Identifying and optimizing ecological security patterns from the perspectiveof the water-energy-food nexus, Journal of Hydrology, 2024
[2] Xiaodong Yan, Junfei Chen. Analysis of carbon emissions from social water cycle in the Pearl River Delta of COVID-19: Perspectives from water-energy-carbon nexus, Journal of Cleaner Production,2024
[3] Tonghui Ding, Junfei Chen, Liping Fang, Juan Jia, Zhou Fang. Urban ecosystem services supply-demand assessment from the perspective of the water-energy-food nexus. Sustainable Cities and Society, 2023
[4] Juan Ji, Junfei Chen, Tonghui Ding, Yan Gu. Security assessment and obstacle factors diagnosis of water-energyfood nexus based on pressure-state-response framework in Northwest China. Stochastic Environmental Research and Risk Assessment, 2023
[5] Tonghui Ding, Liping Fang, Junfei Chen, Juan Ji, Zhou Fang. Exploring the relationship between water-energy-food nexus sustainability and multiple ecosystem services at the urban agglomeration scale. Sustainable Production and Consumption, 2023
[6] Liming Liu, Junfei Chen, Chunbao Wang.Spatiotemporal evolution and trend prediction of regional water–energy–food–ecology system vulnerability: a case study of the Yangtze River Economic Belt, China,Environmental Geochemistry and Health,2023
[7] Tonghui Ding, Junfei Chen, Zhou Fang, Junyu Chen. Assessment of coordinative relationship between comprehensive ecosystem service and urbanization: A case study of Yangtze River Delta urban Agglomerations, China.Ecological Indicators, 2021
[8] Junfei Chen, Liming Liu, Jinpeng Pei, Menghua Deng. An ensemble risk assessment model for urban rainstorm disasters based on random forest and deep belief nets: a case study of Nanjing, China. Natural Hazards, 2021
[9] 陈军飞，张学友，汪倩. 经济效益与水质提升双视角下南水北调水资源供应链契约协调研究. 控制与决策，2023
[10] 刘黎明，陈军飞，等. 长江经济带水-能源-粮食-生态脆弱性时空特征及影响机制. 长江流域资源与环境，2023
[11] 陈军飞，张学友，等.考虑利他偏好的南水北调水资源供应链生态补偿契约决策.河海大学学报(自然科学版), 2023
[12] 汪倩，陈军飞. 南水北调工程通水对受水区水资源集约利用效率的影响.中国人口·资源与环境，2022
[13] 陈军飞， 汪倩. 南水北调工程受水区非农用水对经济增长的影响研究. 水利发展研究，2022
[14] 陈军飞. 推进城市洪涝灾害治理现代化的重点与难点. 国家治理，2021
[15] 支彦玲，陈军飞，王慧敏，刘钢等. 共生视角下中国区域“水-能源-粮食”复合系统适配性评估.中国人口·资源与环境，2020
[16] 陈军飞，李倩，邓梦华，裴金鹏. 基于随机森林与可变模糊集的城市洪涝脆弱性评估.长江流域资源与环境，2020
